Accelerating the Ensemble Convergence of RNA Hairpin Simulations with a Replica Exchange Structure Reservoir

How to understand atomistic molecular dynamics simulations of RNA and protein–RNA complexes? - Šponer - 2017 - WIREs RNA - Wiley Online Library

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Clustering algorithms to analyze molecular dynamics simulation trajectories for complex chemical and biological systems

Two SBU Students Awarded Prestigious Goldwater Scholarships

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RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview. - Abstract - Europe PMC

Maximizing accuracy of RNA structure in refinement against residual dipolar couplings

Biomolecular modeling and simulation: a field coming of age, Quarterly Reviews of Biophysics

Accelerating the Ensemble Convergence of RNA Hairpin Simulations with a Replica Exchange Structure Reservoir

Origins of biological function in DNA and RNA hairpin loop motifs from replica exchange molecular dynamics simulation - Physical Chemistry Chemical Physics (RSC Publishing)

Accelerating the Ensemble Convergence of RNA Hairpin Simulations with a Replica Exchange Structure Reservoir

PDF] Empirical Corrections to the Amber RNA Force Field with Target Metadynamics

Understanding the mechanistic basis of non-coding RNA through molecular dynamics simulations. - Abstract - Europe PMC